#geneName name chrom strand txStart txEnd cdsStart cdsEnd exonCount exonStarts exonEnds LMP-2A K15 chrEBV(AG876) 1 58 167942 58 167942 8 58,360,540,871,1026,1280,1574,167587, 272,458,788,951,1196,1495,1680,167942, LMP-2B LMP-2B chrEBV(AG876) 1 59 1680 59 1680 8 59,360,540,871,1026,1280,1574, 272,458,788,951,1196,1495,1680, BNRF1 ORF75 chrEBV(AG876) 1 1736 5692 1736 5692 1 1736, 5692, EBER-1 0 chrEBV(AG876) 1 6634 6800 6634 6800 1 6634, 6800, EBER-2 0 chrEBV(AG876) 1 6961 7133 6961 7133 1 6961, 7133, "region containing oriP, the latent cycle origin of DNA replication" 0 chrEBV(AG876) 1 7320 9295 7320 9295 1 7320, 9295, BCRF1 vIL-10 chrEBV(AG876) 1 9659 10171 9659 10171 1 9659, 10171, EBNA-LP latency protein chrEBV(AG876) 1 14391 35662 14391 35662 17 14391,14542,14684,17607,17754,20677,20824,23747,23894,26817,26964,29887,30034,32957,33104,35441,35558, 14392,14602,14815,17672,17885,20742,20955,23812,24025,26882,27095,29952,30165,33022,33235,35473,35662, EBNA-2 latency protein chrEBV(AG876) 1 36201 37565 36201 37565 1 36201, 37565, corresponds to BHLF1 in NC_007605; unlikely to encode a functional protein 0 chrEBV(AG876) 0 38278 40385 38278 40385 1 38278, 40385, "region containing oriLyt, the core lytic cycle origin of DNA replication" 0 chrEBV(AG876) 1 40417 41409 40417 41409 1 40417, 41409, BHRF1 gb|ABB89223.1| chrEBV(AG876) 1 42204 42779 42204 42779 1 42204, 42779, BFLF2 ORF69 chrEBV(AG876) 0 43807 44763 43807 44763 1 43807, 44763, BFLF1 ORF68 chrEBV(AG876) 0 44776 46353 44776 46353 1 44776, 46353, BFRF1A ORF67A chrEBV(AG876) 1 46352 46759 46352 46759 1 46352, 46759, BFRF1 ORF67 chrEBV(AG876) 1 46719 47729 46719 47729 1 46719, 47729, BFRF2 ORF66 chrEBV(AG876) 1 47636 49411 47636 49411 1 47636, 49411, BFRF3 ORF65 chrEBV(AG876) 1 49335 49865 49335 49865 1 49335, 49865, BPLF1 ORF64 chrEBV(AG876) 0 49906 59370 49906 59370 1 49906, 59370, BOLF1 ORF63 chrEBV(AG876) 0 59363 63085 59363 63085 1 59363, 63085, BORF1 ORF62 chrEBV(AG876) 1 63084 64178 63084 64178 1 63084, 64178, BORF2 ORF61 chrEBV(AG876) 1 64253 66733 64253 66733 1 64253, 66733, BaRF1 ORF60 chrEBV(AG876) 1 66746 67654 66746 67654 1 66746, 67654, BMRF1 ORF59 chrEBV(AG876) 1 67745 68959 67745 68959 1 67745, 68959, BMRF2 ORF58 chrEBV(AG876) 1 68964 70037 68964 70037 1 68964, 70037, BSLF2/BMLF1 ORF57 chrEBV(AG876) 0 70589 72134 70589 72134 2 70589,72074, 71967,72134, BSLF1 ORF56 chrEBV(AG876) 0 72103 74727 72103 74727 1 72103, 74727, BSRF1 ORF55 chrEBV(AG876) 1 74770 75426 74770 75426 1 74770, 75426, BLLF3 ORF54 chrEBV(AG876) 0 75484 76320 75484 76320 1 75484, 76320, BLRF1 ORF53 chrEBV(AG876) 1 76393 76701 76393 76701 1 76393, 76701, BLRF2 ORF52 chrEBV(AG876) 1 76771 77259 76771 77259 1 76771, 77259, BLLF1 ORF51 chrEBV(AG876) 0 77276 79936 77276 79936 1 77276, 79936, corresponds to BLLF2 in NC_007605; unlikely to encode a functional protein 0 chrEBV(AG876) 0 77413 77859 77413 77859 1 77413, 77859, EBNA-3A latency protein chrEBV(AG876) 1 80026 82888 80026 82888 2 80026,80447, 80361,82888, EBNA-3B latency protein chrEBV(AG876) 1 83074 86532 83074 86532 2 83074,83509, 83430,86532, EBNA-3C latency protein chrEBV(AG876) 1 86654 89937 86654 89937 2 86654,87088, 87013,89937, BZLF2 envelope glycoprotein gp42 chrEBV(AG876) 0 89959 90630 89959 90630 1 89959, 90630, BZLF1 Zta chrEBV(AG876) 0 90724 91697 90724 91697 3 90724,90941,91197, 90855,91045,91697, BRLF1 Rta chrEBV(AG876) 0 91908 93725 91908 93725 1 91908, 93725, BRRF1 ORF49 chrEBV(AG876) 1 93724 94656 93724 94656 1 93724, 94656, BRRF2 ORF48 chrEBV(AG876) 1 94844 96457 94844 96457 1 94844, 96457, EBNA-1 latency protein chrEBV(AG876) 1 96492 98417 96492 98417 1 96492, 98417, BKRF2 ORF47 chrEBV(AG876) 1 98500 98913 98500 98913 1 98500, 98913, BKRF3 ORF46 chrEBV(AG876) 1 98895 99662 98895 99662 1 98895, 99662, BKRF4 ORF45 chrEBV(AG876) 1 99676 100329 99676 100329 1 99676, 100329, BBLF4 ORF44 chrEBV(AG876) 0 100372 102801 100372 102801 1 100372, 102801, BBRF1 ORF43 chrEBV(AG876) 1 102746 104587 102746 104587 1 102746, 104587, BBRF2 ORF42 chrEBV(AG876) 1 104490 105326 104490 105326 1 104490, 105326, BBLF2/BBLF3 ORF40 chrEBV(AG876) 0 105323 107580 105323 107580 2 105323,106057, 105928,107580, BBRF3 ORF49 chrEBV(AG876) 1 107679 108896 107679 108896 1 107679, 108896, BBLF1 ORF38 chrEBV(AG876) 0 109289 109516 109289 109516 1 109289, 109516, BGLF5 ORF37 chrEBV(AG876) 0 109471 110883 109471 110883 1 109471, 110883, BGLF4 ORF36 chrEBV(AG876) 0 110867 112156 110867 112156 1 110867, 112156, BGLF3.5 ORF35 chrEBV(AG876) 0 112035 112496 112035 112496 1 112035, 112496, BGLF3 ORF34 chrEBV(AG876) 0 112483 113481 112483 113481 1 112483, 113481, BGRF1/BDRF1 ORF29 chrEBV(AG876) 1 113480 118890 113480 118890 2 113480,117754, 114415,118890, BGLF2 ORF33 chrEBV(AG876) 0 114405 115415 114405 115415 1 114405, 115415, BGLF1 ORF32 chrEBV(AG876) 0 115393 116913 115393 116913 1 115393, 116913, BDLF4 ORF31 chrEBV(AG876) 0 116883 117560 116883 117560 1 116883, 117560, BDLF3.5 ORF30 chrEBV(AG876) 0 117539 117772 117539 117772 1 117539, 117772, BDLF3 ORF28 chrEBV(AG876) 0 118901 119605 118901 119605 1 118901, 119605, BDLF2 ORF27 chrEBV(AG876) 0 119666 120928 119666 120928 1 119666, 120928, BDLF1 ORF26 chrEBV(AG876) 0 120939 121844 120939 121844 1 120939, 121844, BcLF1 ORF25 chrEBV(AG876) 0 121860 126005 121860 126005 1 121860, 126005, BcRF1 ORF24 chrEBV(AG876) 1 126004 128256 126004 128256 1 126004, 128256, BTRF1 ORF23 chrEBV(AG876) 1 128243 129457 128243 129457 1 128243, 129457, BXLF2 ORF22 chrEBV(AG876) 0 129454 131574 129454 131574 1 129454, 131574, BXLF1 ORF21 chrEBV(AG876) 0 131576 133399 131576 133399 1 131576, 133399, BXRF1 ORF20 chrEBV(AG876) 1 133398 134144 133398 134144 1 133398, 134144, BVRF1 ORF19 chrEBV(AG876) 1 133954 135666 133954 135666 1 133954, 135666, BVLF1 ORF18 chrEBV(AG876) 0 135636 136454 135636 136454 1 135636, 136454, BVRF2 ORF17 chrEBV(AG876) 1 136465 138282 136465 138282 1 136465, 138282, BdRF1 ORF17.5 chrEBV(AG876) 1 137245 138282 137245 138282 1 137245, 138282, BILF2 membrane glycoprotein chrEBV(AG876) 0 138317 139063 138317 139063 1 138317, 139063, corresponds to LF3 in NC_007605; unlikely to encode a functional protein 0 chrEBV(AG876) 1 141396 144755 141396 144755 1 141396, 144755, 30 copies; IR4; PstI direct chrEBV(AG876) 1 141591 144696 141591 144696 1 141591 144696 "region containing oriLyt, the core lytic cycle origin of DNA replication" 0 chrEBV(AG876) 1 144674 145855 144674 145855 1 144674, 145855, DRright; similar to DRleft direct chrEBV(AG876) 1 144695 145739 144695 145739 1 144695, 145739, LF2 ORF11 chrEBV(AG876) 0 150519 151808 150519 151808 1 150519, 151808, LF1 ORF10 chrEBV(AG876) 0 151769 153178 151769 153178 1 151769, 153178, corresponds to RPMS1 in NC_007605; unlikely to encode a functional protein 0 chrEBV(AG876) 1 151807 157036 151807 157036 2 151807,156751, 151832,157036, BILF1 G-protein coupled receptor chrEBV(AG876) 0 153187 154125 153187 154125 1 153187, 154125, BALF5 ORF9 chrEBV(AG876) 0 154725 157772 154725 157772 1 154725, 157772, BALF4 ORF8 chrEBV(AG876) 0 157775 160348 157775 160348 1 157775, 160348, corresponds to A73 in NC_007605; unlikely to encode a functional protein 0 chrEBV(AG876) 1 158136 161349 158136 161349 4 158136,158330,160109,161265, 158221,158412,160235,161349, BALF3 ORF7 chrEBV(AG876) 0 160335 162392 160335 162392 1 160335, 162392, corresponds to BARF0 in NC_007605; unlikely to encode a functional protein 0 chrEBV(AG876) 1 160605 162020 160605 162020 1 160605, 162020, BALF2 ORF6 chrEBV(AG876) 0 162410 165796 162410 165796 1 162410, 165796, BALF1 vbcl-2b chrEBV(AG876) 0 165881 166429 165881 166429 1 165881, 166429, BARF1 gb|ABB89291.1| chrEBV(AG876) 1 166530 167195 166530 167195 1 166530, 167195, BNLF2b gb|ABB89292.1| chrEBV(AG876) 0 168024 168320 168024 168320 1 168024, 168320, BNLF2a gb|ABB89293.1| chrEBV(AG876) 0 168330 168512 168330 168512 1 168330, 168512, LMP-1 gb|ABB89294.1| chrEBV(AG876) 0 169188 170457 169188 170457 3 169188,170025,170190, 169948,170111,170457, TR direct chrEBV(AG876) 1 171077 172734 171077 172734 1 171077, 172734,